Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs35311556 chr6:127633203 TA/T 1.98E-5 110 0.98 16.23 15.17 KM Plot
LAML rs35549063 chr4:16040094 C/T 0.000159 109 15.2 12.65 0 KM Plot
LAML rs35565130 chr10:78954596 GA/G 0.000118 111 14.22 15.73 0 KM Plot
LAML rs35573067 chr6:127646856 A/AT 1.89E-5 109 0.98 16.3 14.18 KM Plot
LAML rs35672975 chr7:105149402 C/T 0.00015 110 16.17 13.1 0 KM Plot
LAML rs35678314 chr1:886182 TG/T 0.000158 111 0 15.67 14.22 KM Plot
LAML rs35724800 chr17:28607766 G/A 0.000116 111 19.82 15.7 6.1 KM Plot
LAML rs35725675 chr6:127628904 G/GAA 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs35754677 chr13:21847842 C/CA 3.97E-10 107 16.2 13.1 0 KM Plot
LAML rs35788372 chr19:33911264 AT/ATT 1.64E-5 110 16.2 16.3 3 KM Plot
LAML rs35791713 chr2:2221631 C/T 0.000165 109 15.17 13.1 0 KM Plot
LAML rs35825681 chr11:119732550 C/G 0.000139 109 15.7 12.68 0 KM Plot
LAML rs35848422 chr19:16246100 A/G 7.61E-5 110 16.23 8.13 0 KM Plot
LAML rs35881870 chr19:12554464 G/A 1.05E-5 111 6.63 21.82 13.1 KM Plot
LAML rs35968460 chr11:119727199 C/T 0.000139 109 15.7 12.68 0 KM Plot